Content Posted in 2006
A Comparative Analysis of the Chronic Effects of Fine Particulate Matter, Sorina E. Eftim, Holly Janes, Aidan McDermott, Jonathan M. Samet, and Francesca Dominici
A Comparison of Methods for Estimating the Causal Effect of a Treatment in Randomized Clinical Trials Subject to Noncompliance, Rod Little, Qi Long, and Xihong Lin
A Computationally Tractable Multivariate Random Effects Model for Clustered Binary Data, Brent A. Coull, E. Andres Houseman, and Rebecca A. Betensky
A Diagnostic Test for the Mixing Distribution in a Generalised Linear Mixed Model, Eric J. Tchetgen and Brent A. Coull
Adjusting for Covariate Effects on Classification Accuracy Using the Covariate-Adjusted ROC Curve, Holly Janes and Margaret S. Pepe
A Faster Circular Binary Segmentation Algorithm for the Analysis of Array CGH Data, E S. Venkatraman and Adam Olshen
A FLEXIBLE GENERAL CLASS OF MARGINAL AND CONDITIONAL RANDOM INTERCEPT MODELS FOR BINARY OUTCOMES USING MIXTURES OF NORMALS, Brian Caffo, Ming-Wen An, and Charles A. Rohde
A Flexible Statistical Method for Detecting Genomic Copy-Number Changes Using Hidden Markov Models with Reversible Jump MCMC , Oscar M. Rueda and Ramon Diaz-Uriarte
A General Framework for Statistical Performance Comparison of Evolutionary Computation Algorithms, David Shilane, Jarno Martikainen, Sandrine Dudoit, and Seppo Ovaska
A Likelihood Based Method for Real Time Estimation of the Serial Interval and Reproductive Number of an Epidemic, Laura Forsberg White and Marcello Pagano
A Marginalized Diffusion Model for Estimating Age at First Endoscopy Examination from Current Status Data, Diana Miglioretti and Elizabeth Brown
A Matrix Pooling Algorithm for Disease Detection, Bethany L. Hedt and Marcello Pagano
Analysis of Case-Control Age-at-Onset Data Using a Modified Case-Cohort Method, Bin Nan and Xihong Lin
An Informative Bayesian Structural Equation Model to Assess Source-Specific Health Effects of Air Pollution, Margaret C. Nikolov, Brent A. Coull, Paul J. Catalano, and John J. Godleski
A note on bias due to fitting prospective multivariate generalized linear models to categorical outcomes ignoring retrospective sampling schemes, Bhramar Mukherjee and Ivy Liu
A Semiparametric Approach for the Nonparametric Transformation Survival Model With Multiple Covariates, Xiao Song, Shuangge Ma, Jian Huang, and Xiao-Hua Zhou
Assessing the Adequacy of Variance Function in Heteroscedastic Regression Models, Lan Wang and Xiao-Hua Andrew Zhou
A Theory of Sufficient Cause Interactions, Tyler J. VanderWeele and James M. Robins
A unifying approach for haplotype analysis of quantitative traits in family-based association studies: Testing and estimating gene-environment interactions with complex exposure variables, Stijn Vansteelandt and Christoph Lange
Bayesian Smoothing of Irregularly-spaced Data Using Fourier Basis Functions, Christopher J. Paciorek
Biologic Interaction and Their Identification, Tyler J. VanderWeele and James Robins
BIVARIATE BINOMIAL SPATIAL MODELLING LOA loa PREVALENCE IN TROPICAL AFRICA, Ciprian M. Crainiceanu, Peter J. Diggle, and Barry Rowlingson
Case-cohort Methods for Survival Data on Families from Routine Registers, Tron Anders Moger, Yudi Pawitan, and Ørnulf Borgan
Causal Comparisons in Randomized Trials of Two Active Treatments: The Effect of Supervised Exercise to Promote Smoking Cessation, Jason Roy and Joseph W. Hogan
Causal Effect Models for Intention to Treat and Realistic Individualized Treatment Rules, Mark J. van der Laan
Causal Inference in Hybrid Intervention Trials Involving Treatment Choice, Qi Long, Rod Little, and Xihong Lin
Censored Data Regression in High-Dimension and Low-Sample Size Settings For Genomic Applications, Hongzhe Li
Combining Information from Two Surveys to Estimate County-Level Prevalence Rates of Cancer Risk Factors and Screening, Trivellore E. Raghuanthan, Dawei Xie, Nathaniel Schenker, Van Parsons, William W. Davis, Kevin W. Dodd, and Eric J. Feuer
Comparing the Predictive Values of Diagnostic Tests: Sample Size and Analysis for Paired Study Designs, Chaya S. Moskowitz and Margaret S. Pepe
Comparison of Haplotype-based and Tree-based SNP Imputation in Association Studies, James Y. Dai, Ingo Ruczinski, Michael LeBlanc, and Charles Kooperberg
Conditional Likelihood Methods for Haplotype-based Association Analysis Using Matched Case-Control Data, Jinbo Chen and Carmen Rodriguez
COVARIATE SPECIFIC ROC CURVE WITH SURVIVAL OUTCOME, Xiao Song and Xiao-Hua Zhou
COX MODELS WITH NONLINEAR EFFECT OF COVARIATES MEASURED WITH ERROR: A CASE STUDY OF CHRONIC KIDNEY DISEASE INCIDENCE, Ciprian M. Crainiceanu, David Ruppert, and Josef Coresh
Crude Cumulative Incidence in the form of a Horvitz-Thompson like and Kaplan-Meier like Estimator, Laura Antolini, Elia Mario Biganzoli, and Patrizia Boracchi
Detecting Pulsatile Hormone Secretion Events: A Bayesian Approach, Tim Johnson
Diagnosing Bias in the Inverse Probability of Treatment Weighted Estimator Resulting from Violation of Experimental Treatment Assignment, Yue Wang, Maya L. Petersen, David Bangsberg, and Mark J. van der Laan
Different Public Health Interventions have Varying Effects, Paula Diehr, Anne B. Newman, Liming Cai, and Ann Derleth
Disease Mapping and Spatial Regression with Count Data, Jon Wakefield
Doubly Penalized Buckley-James Method for Survival Data with High-Dimensional Covariates, Sijian Wang, Bin Nan, Ji Zhu, and David G. Beer
Doubly Robust Censoring Unbiased Transformations, Daniel Rubin and Mark J. van der Laan
Empirical Bayes Approach to Controlling Familywise Error: An Application to HIV Resistance Data, Rhoderick N. Machekano and Alan E. Hubbard
ESTIMATING GENOME-WIDE COPY NUMBER USING ALLELE SPECIFIC MIXTURE MODELS, Wenyi Wang , Benilton Caravalho, Nate Miller, Jonathan Pevsner, Aravinda Chakravarti, and Rafael A. Irizarry
Estimating the Integrated Likelihood via Posterior Simulation Using the Harmonic Mean Identity, Adrian E. Raftery, Michael A. Newton, Jaya M. Satagopan, and Pavel N. Krivitsky
Estimation in Semiparametric Transition Measurement Error Models for Longitudinal Data, Wenqin Pan, Donglin Zeng, and Xihong Lin
Evaluating Causal Effect Predictiveness of Candidate Surrogate Endpoints, Peter B. Gilbert and Michael Hudgens
Evaluating Prediction Rules for t-Year Survivors With Censored Regression Models, Hajime Uno, Tianxi Cai, Lu Tian, and L.J. Wei
Evaluating the Predictiveness of a Continuous Marker, Ying Huang, Margaret S. Pepe, and Ziding Feng
Exploiting Gene-Environment Independence for Analysis of Case-Control Studies: An Empirical Bayes Approach to Trade Off between Bias and Efficiency , Bhramar Mukherjee
Exploiting Gene-Environment Independence for Analysis of Case-Control Studies: An Empirical Bayes Approach to Trade Off between Bias and Efficiency, Bhramar Mukherjee and Nilanjan Chatterjee
EXPLORATION, NORMALIZATION, AND GENOTYPE CALLS OF HIGH DENSITY OLIGONUCLEOTIDE SNP ARRAY DATA, Benilton Carvalho, Terence P. Speed, and Rafael A. Irizarry
Exploration of distributional models for a novel intensity-dependent normalization , Nicola Lama, Patrizia Boracchi, and Elia Mario Biganzoli
Extending Marginal Structural Models through Local, Penalized, and Additive Learning, Daniel Rubin and Mark J. van der Laan
FAST ADAPTIVE PENALIZED SPLINES, Tatyana Krivobokova, Ciprian M. Crainiceanu, and Goran Kauermann
FDR and Bayesian Multiple Comparisons Rules, Peter Muller, Giovanni Parmigiani, and Kenneth Rice
FEATURE-LEVEL EXPLORATION OF THE CHOE ET AL. AFFYMETRIX GENECHIP CONTROL DATASET, Rafael A. Irizarry, Leslie Cope, and Zhijin Wu
Functional ANOVA Normalization of Two-Channel Microarrays, Alan Dabney and John D. Storey
GAMMA SHAPE MIXTURES FOR HEAVY-TAILED DISTRIBUTIONS, Sergio Venturini, Francesca Dominici, and Giovanni Parmigiani
Generalized confidence intervals for the ratio or difference of two means for lognormal populations with zeros, Yea-Hung Chen and Xiao-Hua Zhou
Generalized Monotonic Functional Mixed Models with Application to Modeling Normal Tissue Complications , Matthew Schipper, Jeremy Taylor, and Xihong Lin
Genome Scanning Methods for Comparing Sequences Between Groups, with Application to HIV Vaccine Trials, Peter B. Gilbert, Chunyuan Wu, and David V. Jobes
Group Additive Regression Models for Genomic Data Analysis, Yihui Luan and Hongzhe Li
Hierarchical Lévy Frailty Models and a Frailty Analysis of Data on Infant Mortality in Norwegian Siblings, Tron Anders Moger and Odd O. Aalen
Hierarchical Models for Combining Ecological and Case-control Data, Sebastien Haneuse and Jon Wakefield
Improved generalized estimating equation analysis via xtqls for implementation of quasi-least squares in Stata, Justine Shults, Sarah J. Ratcliffe, and Mary Leonard
Individualized Treatment Rules: Generating Candidate Clinical Trials, Maya L. Petersen, Steven G. Deeks, and Mark J. van der Laan
Integrating the Predictiveness of a Marker with its Performance as a Classifier, Margaret S. Pepe, Ziding Feng, Ying Huang, Gary M. Longton, Ross Prentice, Ian M. Thompson, and Yingye Zheng
INTERACTING WITH DATA USING THE FILEHASH PACKAGE FOR R, Roger Peng
INTERACTING WITH LOCAL AND REMOTE DATA RESPOSITORIES USING THE stashR PACKAGE, Sandrah P. Eckel and Roger Peng
INVESTIGATING MEDIATION WHEN COUNTERFACTUALS ARE NOT METAPHYSICAL: DOES SUNLIGHT UVB EXPOSURE MEDIATE THE EFFECT OF EYEGLASSES ON CATARACTS?, Brian Egleston, Daniel O. Scharfstein, Beatriz Munoz, and Sheila West
Large Cluster Asymptotics for GEE: Working Correlation Models, Hyoju Chung and Thomas Lumley
Lehmann Family of ROC Curves, Mithat Gonen and glenn heller
Longitudinal Nested Compliance Class Model in the Presence of Time-Varying Noncompliance, Julia Y. Lin, Thomas R. TenHave, and Michael R. Elliott
Matrix Pooling: An Accurate and Cost Effective Testing Algorithm for Detection of Acute HIV Infection, Bethany L. Hedt and Marcello Pagano
Mixed Multiplicative Factor Analysis Model for Air Pollution Exposure Assessment, Margaret C. Nikolov, Brent A. Coull, Paul J. Catalano, and John J. Godleski
MULTIPLE DISEASES IN CARRIER PROBABILITY ESTIMATION: ACCOUNTING FOR SURVIVING ALL CANCERS OTHER THAN BREAST AND OVARY IN BRCAPRO, Hormuzd A. Katki, Amanda Blackford, Sining Chen, and Giovanni Parmigiani
Multiple imputation for the comparison of two screening tests in two-phase Alzheimer studies, Ofer Harel and Xiao-Hua Zhou
Multiple Imputation in the Presence of Outliers, Michael Elliott
Multiple imputation - Review of theory, implementation and software, Ofer Harel and Xiao-Hua Zhou
Multiple Testing With an Empirical Alternative Hypothesis, James E. Signorovitch
Multiple Tests of Association with Biological Annotation Metadata, Sandrine Dudoit, Sunduz Keles, and Mark J. van der Laan
MULTIVARIATE ANALYSIS AND VISUALIZATION OF SPLICING CORRELATIONS IN SINGLE-GENE TRANSCRIPTOMES, Mark C. Emerick, Giovanni Parmigiani, and William S. Agnew
Nested Markov Compliance Class Model in the Presence of Time-Varying Noncompliance, Julia Y. Lin, Thomas R. TenHave, and Michael R. Elliott
New Spiked-In Probe Sets for the Affymetrix HGU-133A Latin Square Experiment, Monnie McGee and Zhongxue Chen
Nonparametric Pathway-Based Regression Models for Analysis of Genomic Data, Zhi Wei and Hongzhe Li
Nonparametric Regression Using Local Kernel Estimating Equations for Correlated Failure Time Data, Zhangsheng Yu and Xihong Lin
ON MARGINALIZED MULTILEVEL MODELS AND THEIR COMPUTATION, Michael E. Griswold and Scott L. Zeger
ON THE EQUIVALENCE OF CASE-CROSSOVER AND TIME SERIES METHODS IN ENVIRONMENTAL EPIDEMIOLOGY, Yun Lu and Scott L. Zeger
ON THE POTENTIAL FOR ILL-LOGIC WITH LOGICALLY DEFINED OUTCOMES, Xianbin Li, Brian S. Caffo, and Daniel O. Scharfstein
On the Structure of Multiple Testing Procedures, Jeffrey Leek and John D. Storey
On The Violation Of Bounds For The Correlation In Generalized Estimating Equation Analyses Of Binary Data From Longitudinal Trials, Justine Shults, Wenguang Sun, Xin Tu, and Jay Amsterdam
PENALIZED LIKELIHOOD AND BAYESIAN METHODS FOR SPARSE CONTINGENCY TABLES: AN ANALYSIS OF ALTERNATIVE SPLICING IN FULL-LENGTH cDNA LIBRARIES, Corinne Dahinden, Giovanni Parmigiani, Mark C. Emerick, and Peter Buhlmann
Permutation Methods in Relative Risk Regression Models, Wenyu Jiang and Jack Kalbfleisch
PLASQ: A Generalized Linear Model-Based Procedure to Determine Allelic Dosage ini Cancer Cells from SNP Array Data, Thomas LaFramboise, David P. Harrington, and Barbara A. Weir
POOR PERFORMANCE OF BOOTSTRAP CONFIDENCE INTERVALS FOR THE LOCATION OF A QUANTITATIVE TRAIT LOUCS, Ani Manichaikul, Josee Dupuis, Saunak Sen, and Karl W. Broman
Posterior Simulation in the Generalized Linear Model with Semiparmetric Random Effects, Subharup Guha
Predicting Future Responses Based on Possibly Misspecified Working Models, Tianxi Cai, Lu Tian, Scott D. Solomon, and L.J. Wei
PRINCIPAL STRATIFICATION DESIGNS TO ESTIMATE INPUT DATA MISSING DUE TO DEATH, Constantine E. Frangakis, Donald B. Rubin, Ming-Wen An, and Ellen MacKenzie
Properties of Monotonic Effects, Tyler J. VanderWeele and James M. Robins
RECURRENT EVENT MODELS IN THE PRESENCE OF A TERMINAL EVENT: COMPARISON, INFERENCE AND DATA ANALYSIS, Xianghua Luo and Mei-Cheng Wang
Regression Analysis for the Partial Area Under the ROC Curve, Tianxi Cai and Lori E. Dodd
Regression Models for Bivariate Binary Responses, Juni Palmgren
Relative Risk Regression in Medical Research: Models, Contrasts, Estimators, and Algorithms, Thomas Lumley, Richard Kronmal, and Shuangge Ma
Reliability, Effect Size, and Responsiveness and Intraclass Correlation of Health Status Measures Used in Randomized and Cluster-Randomized Trials, Paula Diehr, Lu Chen, Donald L. Patrick, Ziding Feng, and Yutaka Yasui
Selecting 'Significant' Differentially Expressed Genes from the Combined Perspective of the Null and the Alternative, Beatrijs Moerkerke and Els Goetghebeur
Semiparametric Analysis for Correlated Recurrent and Terminal Events, Yining Ye, Jack Kalbfleisch, and Doug E. Schaubel
Semiparametric Bayesian Modeling of Multivariate Average Bioequivalence, Pulak Ghosh Dr. and Mithat Gonen
Semiparametric Latent Variable Regression Models for Spatio-temporal Modeling of Mobile Source Particles in the Greater Boston Area, Alexandros Gryparis, Brent A. Coull, Joel Schwartz, and Helen H. Suh
Semiparametric Regression of Multi-Dimensional Genetic Pathway Data: Least Squares Kernel Machines and Linear Mixed Models, Dawei Liu, Xihong Lin, and Debashis Ghosh
Semiparametric Regression of Multi-Dimensional Genetic Pathway Data: Least Squares Kernel Machines and Linear Mixed Models, Dawei Liu, Xihong Lin, and Debashis Ghosh
Sequential Quantitative Trait Locus Mapping in Experimental Crosses, Jaya M. Satagopan, Saunak Sen, and Gary A. Churchill
Simple Records Matching Method for diagnostic and clinical datasets of patient’s records, Salvo Reina, Vito M. Reina, and Eugenio A. Debbia
Simultaneously Optimizing Dose and Schedule of a New Cytotoxic Agent, Thomas M. Braun, Peter F. Thall, Hoang Nguyen, and Marcos de Lima
Smoothed Rank Regression with Censored Data, glenn heller
Spatial Cluster Detection for Censored Outcome Data, Andrea J. Cook, Diane Gold, and Yi Li
Spatio-Temporal Analysis of Areal Data and Discovery of Neighborhood Relationships in Conditionally Autoregressive Models, Subharup Guha and Louise Ryan
Statistical Analysis of Air Pollution Panel Studies: An Illustration, Holly Janes, Lianne Sheppard, and Kristen Shepherd
Statistical Learning of Origin-Specific Statically Optimal Individualized Treatment Rules, Mark J. van der Laan and Maya L. Petersen
STATISTICAL METHODS FOR THE ANALYSIS OF CANCER GENOME SEQUENCING DATA, Giovanni Parmigiani, J. Lin, Simina Boca, T. Sjoblom, K.W. Kinzler, V.E. Velculescu, and B. Vogelstein
Structural Inference in Transition Measurement Error Models for Longitudinal Data, Wenqin Pan, Xihong Lin, and Donglin Zeng
Super Learning: An Application to Prediction of HIV-1 Drug Susceptibility, Sandra E. Sinisi, Maya L. Petersen, and Mark J. van der Laan
Supervised Detection of Conserved Motifs in DNA Sequences with cosmo, Oliver Bembom, Sunduz Keles, and Mark J. van der Laan
Survival Analysis Methods in Genetic Epidemiology, Hongzhe Li
Survival Analysis of Longitudinal Microarrays, Natasa Rajicic, Dianne M. Finkelstein, and David A. Schoenfeld
Survival Analysis with Change Point Hazard Functions, Melody S. Goodman, Yi Li, and Ram C. Tiwari
Targeted Maximum Likelihood Learning, Mark J. van der Laan and Daniel Rubin
The Combination of Ecological and Case-Control Data, Sebastien Haneuse and Jon Wakefield
The Two-sample Problem for Failure Rates Depending on a Continuous Mark: An Application to Vaccine Efficacy, Peter B. Gilbert, Ian W. McKeague, and Yanqing Sun
TRENDS IN PARTICULATE MATTER AND MORTALITY: AN APPROACH TO THE ASSESSMENT OF UNMEASURED CONFOUNDING, Holly Janes, Francesca Dominici, and Scott Zeger
USE OF HIDDEN MARKOV MODELS FOR QTL MAPPING, Karl W. Broman
Using Profile Likelihood for Semiparametric Model Selection with Application to Proportional Hazards Mixed Models, Ronghui Xu, Anthony Gamst, Michael Donohue, Florin Vaida, and David P. Harrington
Visualizing Genomic Data, Robert Gentleman, Florian Hahne, and Wolfgang Huber