Content Posted in 2009
A BAYESIAN SHRINKAGE MODEL FOR INCOMPLETE LONGITUDINAL BINARY DATA WITH APPLICATION TO THE BREAST CANCER PREVENTION TRIAL, C. Wang, M.J. Daniels, Daniel O. Scharfstein, and S. Land
A classification model for distinguishing copy number variants from cancer-related alterations, Irina Ostrovnaya, Gouri Nanjangud, and Adam Olshen
A Class of Semiparametric Mixture Cure Survival Models with Dependent Censoring, Megan Othus, Yi Li, and Ram C. Tiwari
A Hidden Markov Random Field Model for Genome-wide Association Studies, Hongzhe Li, Zhi Wei, and J M. Maris
A Machine-Learning Algorithm for Estimating and Ranking the Impact of Environmental Risk Factors in Exploratory Epidemiological Studies, Jessica G. Young, Alan E. Hubbard, B Eskenazi, and Nicholas P. Jewell
A MULTILEVEL MODEL TO ADDRESS BATCH EFFECTS IN COPY NUMBER ESTIMATION USING SNP ARRAYS, Robert B. Scharpf, Ingo Ruczinski, Benilton Carvalho, Betty Doan, Aravinda Chakravarti, and Rafael A. Irizarry
A MULTILEVEL MODEL TO ADDRESS BATCH EFFECTS IN COPY NUMBER USING SNP ARRAYS, Robert B. Scharpf, Ingo Ruczinski, Benilton Carvalho, Betty Doan, Aravinda Chakravarti, and Rafael A. Irizarry
Analysis of Randomized Comparative Clinical Trial Data for Personalized Treatment Selections, Tianxi Cai, Lu Tian, Peggy H. Wong, and L. J. Wei
Analyzing Bivariate Survival Data with Interval Sampling and Application to Cancer Epidemiology, Hong Zhu and Mei-Cheng Wang
A New Class of Dantzig Selectors for Censored Linear Regression Models, Yi Li, Lee Dicker, and Sihai Dave Zhao
A New Class of Minimum Power Divergence Estimators with Applications to Cancer Surveillance, Nirian Martin and Yi Li
A New Method for Constructing Exact Tests without Making any Assumptions, Karl H. Schlag
A Novel Topology for Representing Protein Folds, Mark R. Segal
Application of Time-to-Event Methods in the Assessment of Safety in Clinical Trials, Kelly L. Moore and Mark J. van der Laan
A Semi-Parametric Two-Part Mixed-Effects Heteroscedastic Transformation Model for Correlated Right-Skewed Semi-Continuous Data, Huazhen Lin and Xiao-Hua Zhou
A Spatio-Temporal Approach for Estimating Chronic Effects of Air Pollution, Sonja Greven, Francesca Dominici, and Scott L. Zeger
ASSOCIATON TESTS THAT ACCOMMODATE GENOTYPING ERRORS, Ingo Ruczinski, Qing Li, Benilton Carvalho, M. Daniele Fallin, Rafael A. Irizarry, and Thomas A. Louis
Asymptotic Properties of the Sequential Empirical ROC and PPV Curves, Joseph S. Koopmeiners and Ziding Feng
BAYESIAN FUNCTIONAL DATA ANALYSIS USING WinBUGS, Ciprian M. Crainiceanu and A. Jeffrey Goldsmith
Bringing Game Theory to Hypothesis Testing: Establishing Finite Sample Bounds on Inference, Karl H. Schlag
Caching and Visualizing Statistical Analyses, Roger D. Peng and Duncan Temple Lang
Causal Inference for Nested Case-Control Studies using Targeted Maximum Likelihood Estimation, Sherri Rose and Mark J. van der Laan
Causal Inference in Epidemiological Studies with Strong Confounding, Kelly L. Moore, Romain S. Neugebauer, Mark J. van der Laan, and Ira B. Tager
Collaborative Targeted Maximum Likelihood Estimation, Mark J. van der Laan and Susan Gruber
Comparing Risk Scoring Systems Beyond the ROC Paradigm in Survival Analysis, Hajime Uno, Lu Tian, Tianxi Cai, Isaac S. Kohane, and L. J. Wei
Composite likelihood Bayesian information criteria for model selection in high dimensional data, X Gao and Peter Xuekun Song
Composite Likelihood EM Algorithm with Applications to Multivariate Hidden Markov Model , Xin Gao and Peter Xuekun Song
Correlated Binary Regression Using Orthogonalized Residuals, Richard C. Zink and Bahjat F. Qaqish
COVARIATE-ADJUSTED NONPARAMETRIC ANALYSIS OF MAGNETIC RESONANCE IMAGES USING MARKOV CHAIN MONTE CARLO, Haley Hedlin, Brian S. Caffo, Ziyad Mahfoud, and Susan Spear Bassett
EFFICIENT EVALUATION OF RANKING PROCEDURES WHEN THE NUMBER OF UNITS IS LARGE WITH APPLICATION TO SNP IDENTIFICATION, Thomas A. Louis and Ingo Ruczinski
Efficient Measurement Error Correction with Spatially Misaligned Data, Adam A. Szpiro, Lianne Sheppard, and Thomas Lumley
Estimating effects by combining instrumental variables with case-control designs: the role of principal stratification, Russell T. Shinohara, Constantine E. Frangakis, Elizabeth Platz, and Konstantinos Tsilidis
Estimating Subject-Specific Dependent Competing Risk Profile with Censored Event Time Observations, Yi Li, Lu Tian, and L. J. Wei
Evaluating Markers for Treatment Selection Based on Survival Time, Xiao Song and Xiao-Hua Zhou
Evaluation of Statistical Methods for Normalization and Differential Expression in mRNA-Seq Experiments, James H. Bullard, Elizabeth A. Purdom, Kasper D. Hansen, and Sandrine Dudoit
Fitting ACE Structural Equation Models to Case-Control Family Data, Kristin N. Javaras, James I. Hudson, and Nan M. Laird
FROZEN ROBUST MULTI-ARRAY ANALYSIS (fRMA), Matthew N. McCall, Benjamin M. Bolstad, and Rafael A. Irizarry
GENERALIZED LIQUID ASSOCIATION, Yen-Yi Ho, Leslie Cope, Thomas A. Louis, and Giovanni Parmigiani
GENE SET ENRICHMENT ANALYSIS MADE SIMPLE, Rafael A. Irizarry, Chi Wang, Yun Zhou, and Terence P. Speed
Graphical Displays for Clarifying How Allocation Ratio Affects Total Sample Size for the Two Sample Logrank Test, Benjamin R. Saville, Yong S. Kim, and Gary G. Koch
Group Comparison of Eigenvalues and Eigenvectors of Diffusion Tensors, Armin Schwartzman, Robert F. Dougherty, and Jonathan E. Taylor
"Implementation of quasi-least squares With the R package qlspack", Jichun Xie and Justine Shults
Integrative Clustering of Multiple Genomic Data Types using a Joint Latent Variable Model with Application to Breast and Lung Cancer Subtype Analysis, Ronglai Shen, Adam Olshen, and Marc Ladanyi
Interval Estimation for the Difference in Paired Areas under the ROC Curves in the Absence of a Gold Standard Test, Hsin-Neng Hsieh, Hsiu-Yuan Su, and Xiao-Hua Zhou
Inverse Regression Estimation for Censored Data, Nivedita V. Nadkarni, Yingqi Zhao, and Michael R. Kosorok
Joint Multiple Testing Procedures for Graphical Model Selection with Applications to Biological Networks, Houston N. Gilbert, Mark J. van der Laan, and Sandrine Dudoit
Longitudinal Image Analysis of Tumor/Brain Change in Contrast Uptake Induced by Radiation, Xiaoxi Zhang, Tim Johnson, Rod Little, and Yue Cao
Lot Quality Assurance Sampling (LQAS) and the Mozambique Malaria Indicator Surveys, Caitlin Biedron, Marcello Pagano, Bethany L. Hedt, Albert Kilian, Amy Ratcliffe, Samuel Mabunda, and Joseph J. Valadez
Marginalized Frailty Models for Multivariate Survival Data, Megan Othus and Yi Li
Measures to Summarize and Compare the Predictive Capacity of Markers, Wen Gu and Margaret Pepe
MODEL-BASED QUALITY ASSESSMENT AND BASE-CALLING FOR SECOND-GENERATION SEQUENCING DATA, Rafael A. Irizarry and Hector Corrada Bravo
Modeling Multilevel Sleep Transitional Data Via Poisson Log-Linear Multilevel Models, Bruce J. Swihart
New Statistical Paradigms Leading to Web-Based Tools for Clinical/Translational Science, Knut M. Wittkowski
NONLINEAR TUBE-FITTING FOR THE ANALYSIS OF ANATOMICAL AND FUNCTIONAL STRUCTURES, Jeff Goldsmith, Brian S. Caffo, Ciprian Crainiceanu, Daniel Reich, Yong Du, and Craig Hendrix
Nonparametric and Semiparametric Estimation of the Three Way Receiver Operating Characteristic Surface, Jialiang Li and Xiao-Hua Zhou
Nonparametric Incidence Estimation From Prevalent Cohort Survival Data, Marco Carone, Masoud Asgharian, and Mei-Cheng Wang
Nonparametric population average models: deriving the form of approximate population average models estimated using generalized estimating equations, Alan E. Hubbard and Mark J. van der Laan
On the Behaviour of Marginal and Conditional Akaike Information Criteria in Linear Mixed Models, Sonja Greven and Thomas Kneib
On The C-Statistics For Evaluating Overall Adequacy Of Risk Prediction Procedures With Censored Survival Data, Hajime Uno, Tianxi Cai, Michael J. Pencina, Ralph B. D'Agostino, and L. J. Wei
Pooled Nucleic Acid Testing to Identify Antiretroviral Treatment Failure during HIV Infection, Susanne May, Anthony Gamst, Richard Haubrich, Constance Benson, and Davey Smith
Pragmatic Estimation of a Spatio-Temporal Air Quality Model With Irregular Monitoring Data, Paul D. Sampson, Adam A. Szpiro, Lianne Sheppard, Johan Lindström, and Joel D. Kaufman
Principled Sure Independence Screening for Cox Models with Ultra-high-dimensional Covariates, Sihai Dave Zhao and Yi Li
QUANTIFYING UNCERTAINTY IN GENOTYPE CALLS, Benilton Carvalho, Thomas A. Louis, and Rafael A. Irizarry
Quasi-Least Squares with Mixed Linear Correlation Structures, Jichun Xie, Justine Shults, Jon Peet, Dwight Stambolian, and Mary F. Cotch
Readings in Targeted Maximum Likelihood Estimation, Mark J. van der Laan, Sherri Rose, and Susan Gruber
REDEFINING CpG ISLANDS USING A HIDEEN MARKOV MODEL, Hao Wu, Brain Caffo, Harris A. Jaffee, Andrew P. Feinberg, and Rafael A. Irizarry
Reinforcement Learning Design for Cancer Clinical Trials, Yufan Zhao, Michael R. Kosorok, and Donglin Zeng
Reinforcement Learning Strategies for Clincal Trials in Non-small Cell Lung Cancer, Yufan Zhao, Michael R. Kosorok, Donglin Zeng, and Mark A. Socinski
Reliability of the Model for Clustering of Longitudinal datasets of Infant Mortality Rate in India, Ajay Kumar Bansal and S D. Sharma
Resampling-Based Multiple Hypothesis Testing with Applications to Genomics: New Developments in the R/Bioconductor Package multtest, Houston N. Gilbert, Katherine S. Pollard, Mark J. van der Laan, and Sandrine Dudoit
Robustness of Semiparametric Efficiency in Nearly-Correct Models for Two-Phase Samples, Thomas Lumley
Selecting Optimal Treatments Based on Predictive Factors, Eric C. Polley and Mark J. van der Laan
Semiparametric Two-Part Models with Proportionality Constraints: Analysis of the Multi-Ethnic Study of Atherosclerosis (MESA), Anna Liu, Richard Kronmal, Xiao-Hua Zhou, and Shuangge Ma
Shrinkage Estimation of Expression Fold Change As an Alternative to Testing Hypotheses of Equivalent Expression, Zahra Montazeri, Corey M. Yanofsky, and David R. Bickel
Simple, Defensible Sample Sizes Based on Cost Efficiency -- With Discussion and Rejoinder, Peter Bacchetti, Charles E. McCulloch, Mark R. Segal, Richard Simon, Peter Muller, Gary L. Rosner, James A. Hanley, and Stan Shapiro
Space-Time Regression Modeling of Tree Growth Using the Skew-t Distribution, Farouk S. Nathoo
Sparse Linear Discriminant Analysis for Simultaneous Testing for the Significance of a Gene Set/Pathway and Gene Selection, Michael C. Wu, Lingson Zhang, Zhaoxi Wang, David C. Christiani, and Xihong Lin
Spatial Cluster Detection for Repeatedly Measured Outcomes while Accounting for Residential History, Andrea J. Cook, Diane Gold, and Yi Li
Spatial Cluster Detection for Weighted Outcomes Using Cumulative Geographic Residuals, Andrea J. Cook, Yi Li, David Arterburn, and Ram C. Tiwari
Subset Quantile Normalization using Negative Control Features, Zhijin Wu
Survival Analysis with Error-prone Time-varying Covariates: A Risk Set Calibration Approach, Xiaomei Liao, David M. Zucker, Yi Li, and donna spiegelman
Targeted Genomic signature profiling with Quasi-alignment statistics, Rao Mallik Kotamarti, Douglas W. Raiford, Michael Hahsler, Yuhang Wang, Monnie McGee, and Maggie Dunham
Targeted Maximum Likelihood Estimation: A Gentle Introduction, Susan Gruber and Mark J. van der Laan
The Effect of Correlation in False Discovery Rate Estimation, Armin Schwartzman and Xihong Lin
The Importance of Scale for Spatial-confounding Bias and Precision of Spatial Regression Estimators, Christopher J. Paciorek
The Strength of Statistical Evidence for Composite Hypotheses with an Application to Multiple Comparisons, David R. Bickel
TRIO LOGIC REGRESSION - DETECTION OF SNP - SNP INTERACTIONS IN CASE-PARENT TRIOS, Qing Li, Thomas A. Louis, M. Daniele Fallin, and Ingo Ruczinski
Two-stage Decompositions for the Analysis of Functional Connectivity for fMRI With Application to Alzheimer's Disease Risk, Brian S. Caffo, Ciprian M. Crainiceanu, Guillermo Verduzco, Stewart H. Mostofsky, Susan Spear-Bassett, and James J. Pekar
Validation of Differential Gene Expression Algorithms: Application Comparing Fold Change Estimation to Hypothesis Testing, David R. Bickel and Corey M. Yanofsky