Content Posted in 2005
A Causal Inference Approach for Constructing Transcriptional Regulatory Networks, Biao Xing and Mark J. van der Laan
A Comparison of Parametric and Coarsened Bayesian Interval Estimation in the Presence of a Known Mean-Variance Relationship, Kent Koprowicz, Scott S. Emerson, and Peter Hoff
Additive Hazards Models with Latent Treatment Effectiveness Lag Time, Ying Qing Chen, Charles A. Rohde, and Mei-Cheng Wang
Adjustment Uncertainty in Effect Estimation, Ciprian M. Crainiceanu, Francesca Dominici, and Giovanni Parmigiani
A Fine-Scale Linkage Disequilibrium Measure Based on Length of Haplotype Sharing, Yan Wang, Lue Ping Zhao, and Sandrine Dudoit
A General Imputation Methodology for Nonparametric Regression with Censored Data, Dan Rubin and Mark J. van der Laan
A Hybrid Model for Reducing Ecological Bias, Ruth Salway and Jon Wakefield
A Hybrid Newton-Type Method for the Linear Regression in Case-cohort Studies, Menggang Yu and Bin Nan
A Linear Regression Framework for Receiver Operating Characteristic(ROC) Curve Analysis, Zheng Zhang and Margaret S. Pepe
Alleviating Linear Ecological Bias and Optimal Design with Subsample Data, Adam Glynn, Jon Wakefield, Mark Handcock, and Thomas Richardson
A Mechanistic Latent Variable Model for Estimating Drug Concentrations in the Male Genital Tract, Leena Choi, Brian Caffo, Charles A. Rohde, Themba T. Ndovi, and Craig W. Hendrix
A Method to Increase the Power of Multiple Testing Procedures Through Sample Splitting, Daniel Rubin, Sandrine Dudoit, and Mark J. van der Laan
Analysis of Affymetrix GeneChip Data Using Amplified RNA, Leslie Cope, Scott M. Hartman, Hinrich W.H. Gohlmann, Jay P. Tiesman, and Rafael A. Irizarry
Analyzing Panel Count Data with Informative Observation Times, Chiung-Yu Huang, Mei-Cheng Wang, and Ying Zhang
An Empirical Process Limit Theorem for Sparsely Correlated Data, Thomas Lumley
A New Approach to Intensity-Dependent Normalization of Two-Channel Microarrays, Alan R. Dabney and John D. Storey
An introduction to low-level analysis methods of DNA microarray data, Wolfgang Huber, Anja von Heydebreck, and Martin Vingron
A Note on the Construction of Counterfactuals and the G-computation Formula, Zhuo Yu and Mark J. van der Laan
A Partial Likelihood for Spatio-temporal Point Processes, Peter J. Diggle
Application of a Multiple Testing Procedure Controlling the Proportion of False Positives to Protein and Bacterial Data, Merrill D. Birkner, Alan E. Hubbard, and Mark J. van der Laan
Application of a Variable Importance Measure Method to HIV-1 Sequence Data, Merrill D. Birkner and Mark J. van der Laan
Application of the Time-Dependent ROC Curves for Prognostic Accuracy with Multiple Biomarkers, Yingye Zheng, Tianxi Cai, and Ziding Feng
A Pseudolikelihood Approach for Simultaneous Analysis of Array Comparative Genomic Hybridizations (aCGH), David A. Engler, Gayatry Mohapatra, David N. Louis, and Rebecca Betensky
A Statistical Framework for the Analysis of Microarray Probe-Level Data, Zhijin Wu and Rafael A. Irizarry
Attributable Risk Function in the Proportional Hazards Model, Ying Qing Chen, Chengcheng Hu, and Yan Wang
A User-Friendly Introduction to Link-Probit-Normal Models, Brian S. Caffo and Michael Griswold
Bayesian Analysis of Cell-Cycle Gene Expression Data, Chuan Zhou, Jon Wakefield, and Linda Breeden
Bayesian Evaluation of Group Sequential Clinical Trial Designs, Scott S. Emerson, John M. Kittelson, and Daniel L. Gillen
Bayesian Hidden Markov Modeling of Array CGH Data, Subharup Guha, Yi Li, and Donna Neuberg
Casual Mediation Analyses with Structural Mean Models, Thomas R. TenHave, Marshall Joffe, Kevin Lynch, Greg Brown, and Stephen Maisto
Causal Inference in Longitudinal Studies with History-Restricted Marginal Structural Models, Romain Neugebauer, Mark J. van der Laan, and Ira B. Tager
Cluster Analysis of Genomic Data with Applications in R, Katherine S. Pollard and Mark J. van der Laan
Colon Cancer Prognosis Prediction by Gene Expression Profiling, Alain Barrier, Sandrine Dudoit, and et al.
Combining Predictors for Classification using the Area Under the ROC Curve, Margaret S. Pepe, Tianxi Cai, Zheng Zhang, and Gary M. Longton
Comparison of Affymetrix GeneChip Expression Measures, Rafael A. Irizarry, Zhijin Wu, and Harris A. Jaffee
Computational Techniques for Spatial Logistic Regression with Large Datasets, Christopher J. Paciorek and Louise Ryan
Computing the Total Sample Size When Group Sizes Are Not Fixed, Mithat Gonen
Concordance Probability and Discriminatory Power in Proportional Hazards Regression, Mithat Gonen and Glenn Heller
Confidence Intervals for Predictive Values Using Data from a Case Control Study, Nathaniel David Mercaldo, Xiao-Hua Zhou, and Kit F. Lau
Constructing Confidence Intervals of the Summary Statistics in the Least-Squares SROC Model, Ming-Yu Fan and Xiao-Hua Zhou
Correspondences between Regression Models for Complex Binary Outcomes and Those for Structured Multivariate Survival Analyses, Nicholas P. Jewell
Cross-validated Bagged Learning, Mark J. van der Laan, Sandra E. Sinisi, and Maya L. Petersen
Cross-validated Bagged Prediction of Survival, Sandra E. Sinisi, Romain Neugebauer, and Mark J. van der Laan
Cross-Validating and Bagging Partitioning Algorithms with Variable Importance, Annette M. Molinaro and Mark J. van der Laan
Data Adaptive Pathway Testing, Merrill D. Birkner, Alan E. Hubbard, and Mark J. van der Laan
Designed Extension of Survival Studies: Application to Clinical Trials with Unrecognized Heterogeneity, Yi Li, Mei-Chiung Shih, and Rebecca A. Betensky
Designs in Partially Controlled Studies: Messages from a Review, Fan Li and Constantine E. Frangakis
Direct Effect Models, Mark J. van der Laan and Maya L. Petersen
Does the Effect of Micronutrient Supplementation on Neonatal Survival Vary with Respect to the Percentiles of the Birth Weight Distribution?, Francesca Dominici, Scott L. Zeger, Giovanni Parmigiani, Joanne Katz, and Parul Christian
Efficacy Studies of Malaria Treatments in Africa: Efficient Estimation with Missing Indicators of Failure, Rhoderick N. Machekano, Grant Dorsey, and Alan E. Hubbard
Empirical Likelihood Inference for the Area Under the ROC Curve, Gengsheng Qin and Xiao-Hua Zhou
Empirical Likelihood Intervals for the Mean Difference of Two Skewed Populations with Additional Zero Values, W. Zhou and Xiao-Hua Zhou
Estimating a Treatment Effect with Repeated Measurements Accounting for Varying Effectiveness Duration, Ying Qing Chen, Jingrong Yang, and Su-Chun Cheng
Estimating Function Based Cross-Validation and Learning, Mark J. van der Laan and Daniel Rubin
Estimation and Projection of Indicence and Prevalence Based on Doubly Truncated Data with Application to Pharmacoepidemiological Databases, Henrik Stovring and Mei-Cheng Wang
Estimation of Direct Causal Effects, Maya L. Petersen and Mark J. van der Laan
Feature-Specific Penalized Latent Class Analysis for Genomic Data, E. Andres Houseman, Brent A. Coull, and Rebecca A. Betensky
Fixed-Width Output Analysis for Markov Chain Monte Carlo, Galin L. Jones, Murali Haran, Brian S. Caffo, and Ronald Neath
Frequentist Evaluation of Group Sequential Clinical Trial Designs, Scott S. Emerson, John M. Kittelson, and Daniel L. Gillen
Gauss-Seidel Estimation of Generalized Linear Mixed Models with Application to Poisson Modeling of Spatially Varying Disease Rates, Subharup Guha and Louise Ryan
G-computation Estimation of Nonparametric Causal Effects on Time-Dependent Mean Outcomes in Longitudinal Studies, Romain Neugebauer and Mark J. van der Laan
Gradient Directed Regularization for Sparse Gaussian Concentration Graphs, with Applications to Inference of Genetic Networks, Hongzhe Li and Jiang Gui
Health-Exposure Modelling and the Ecological Fallacy, Jon Wakefield and Gavin Shaddick
History-Adjusted Marginal Structural Models: Optimal Treatment Strategies, Maya L. Petersen and Mark J. van der Laan
History-Adjusted Marginal Structural Models: Time-Varying Effect Modification, Maya L. Petersen and Mark J. van der Laan
History-Adjusted Marginal Structural Models to Estimate Time-Varying Effect Modification , Maya L. Petersen, Steven G. Deeks, Jeffrey N. Martin, and Mark J. van der Laan
Implementation Of Estimating-Function Based Inference Procedures With MCMC Sampler, Lu Tian, Jun S. Liu, and L. J. Wei
Inference on Survival Data with Covariate Measurement Error - An Imputation-based Approach, Yi Li and Louise Ryan
Inferences in Censored Cost Regression Models with Empirical Likelihood, Xiao-Hua Zhou, Gengsheng Qin, Huazhen Lin, and Gang Li
Insights into Latent Class Analysis, Margaret S. Pepe and Holly Janes
Interval Estimation for the Ratio and Difference of Two Lognormal Means, Yea-Hung Chen and Xiao-Hua Zhou
Issues of Processing and Multiple Testing of SELDI-TOF MS Proteomic Data, Merrill D. Birkner, Alan E. Hubbard, Mark J. van der Laan, Christine F. Skibola, Christine M. Hegedus, and Martyn T. Smith
Is the Number of Sick Persons in a Cohort Constant Over Time?, Paula Diehr, Ann Derleth, Anne Newman, and Liming Cai
ITT Analysis of Randomized Encouragement Design Studies with Missing-Data, Xiao-Hua Zhou, Richard Wang, and Sierra M. Li
Linear Regression of Censored Length-biased Lifetimes, Ying Qing Chen and Yan Wang
Longitudinal Data Analysis for Generalized Linear Models under Irregular, Biased Sampling: Situations with Follow-up Dependent on Outcome or Auxiliary Outcome-related Variables, Petra Buzkova and Thomas Lumley
Marginal Regression Modeling under Irregular, Biased Sampling, Petra Buzkova and Thomas Lumley
Mixture Cure Survival Models with Dependent Censoring, Yi Li, Ram C. Tiwari, and Subharup Guha
Model Checking for ROC Regression Analysis, Tianxi Cai and Yingye Zheng
Model Evaluation Based on the Distribution of Estimated Absolute Prediction Error, Lu Tian, Tianxi Cai, Els Goetghebeur, and L. J. Wei
MODELING DIFFERENTIATED TREATMENT EFFECTS FOR MULTIPLE OUTCOMES DATA, Hongfei Guo and Karen Bandeen-Roche
Multiple Imputation for Correcting Verification Bias, Ofer Harel and Xiao-Hua Zhou
Multiple Testing Procedures and Applications to Genomics, Merrill D. Birkner, Katherine S. Pollard, Mark J. van der Laan, and Sandrine Dudoit
New Confidence Intervals for the Difference between Two Sensitivities at a Fixed Level of Specificity, Gengsheng Qin, Yu-Sheng Hsu, and Xiao-Hua Zhou
NONPARAMETRIC ESTIMATION OF BIVARIATE FAILURE TIME ASSOCIATIONS IN THE PRESENCE OF A COMPETING RISK, Karen Bandeen-Roche and Jing Ning
Nonparametric Estimation of the Case Fatality Ratio with Competing Risks Data: An Application to Severe Acute Respiratory Syndome (SARS) , Nicholas P. Jewell, Xiudong Lei, A. C. Ghani, C. A. Donnelly, G. M. Leung, L. M. Ho, B. Cowling, and A. J. Hedley
Nonparametric Statistical Methods for the Cost-Effectiveness Analysis, Phillip Dinh and Xiao-Hua Zhou
On Additive Regression of Expectancy, Ying Qing Chen
On the Synthesis of Microarray Experiments, Robert Gentleman, Markus Ruschhaupt, and Wolfgang Huber
ON THE USE OF NON-EUCLIDEAN ISOTROPY IN GEOSTATISTICS, Frank C. Curriero
On the Use of Stochastic Curtailment in Group Sequential Clinical Trials, Scott S. Emerson, John M. Kittelson, and Daniel L. Gillen
Optimal Feature Selection for Nearest Centroid Classifiers, With Applications to Gene Expression Microarrays, Alan R. Dabney and John D. Storey
Optimization of the Architecture of Neural Networks Using a Deletion/Substitution/Addition Algorithm, Blythe Durbin, Sandrine Dudoit, and Mark J. van der Laan
Polydesigns and Causal Inference, Fan Li and Constantine E. Frangakis
Population Intervention Models in Causal Inference, Alan E. Hubbard and Mark J. van der Laan
Power Calculations for Preclinical Studies Using a K-Sample Rank Test and the Lehmann Alternative Hypothesis, Glenn Heller
Prognosis of Stage II Colon Cancer by Non-Neoplastic Mucosa Gene Expresssion Profiling, Alain Barrier, Sandrine Dudoit, and et al.
Quantile-Function Based Null Distribution in Resampling Based Multiple Testing, Mark J. van der Laan and Alan E. Hubbard
Relaxing Latent Ignorability in the ITT Analysis of Randomized Studies with Missing Data and Noncompliance, L Taylor and Xiao-Hua Zhou
Resampling Based Multiple Testing Procedure Controlling Tail Probability of the Proportion of False Positives, Mark J. van der Laan, Merrill D. Birkner, and Alan E. Hubbard
Robust Inferences For Covariate Effects On Survival Time With Censored Linear Regression Models, Larry Leon, Tianxi Cai, and L. J. Wei
Sample size and power calculations for body weight in beef cattle, Claudia Cristina Paro Paz, Alfredo Ribeiro de Freitas, Irineu Umberto Packer, Daniela Tambasco-Talhari, Luciana Correa de Almeida Regitano, and Mauricio Mello Alencar
Searching for Differentially Expressed Gene Combinations, Marcel Dettling, Edward Gabrielson, and Giovanni Parmigiani
Semiparametric Approaches for Joint modeling of Longitudinal and Survival Data with Time Varying Coefficients, Xiao Song and C.Y. Wang
Semiparametric Estimation in General Repeated Measures Problems, Xihong Lin and Raymond J. Carroll
Semiparametric inferences for association with semi-competing risks data, Debashis Ghosh
Semiparametric Loglinear Regression for Longitudinal Measurements Subject to Irregular, Biased Follow-up, Petra Buzkova and Thomas Lumley
Semi-Parametric Maximum Likelihood Estimates for ROC Curves of Continuous-Scale Tests, Xiao-Hua Zhou and Hua Zhen Lin
Semiparametric Normal Transformation Models for Spatially Correlated Survival Data, Yi Li and Xihong Lin
Sensitivity of the Hazard Ratio to Non-Ignorable Treatment Assignment in an Observational Study, Nandita Mitra and Daniel F. Heitjan
Shrunken p-values for assessing differential expression, with applications to genomic data analysis, Debashis Ghosh
Simultaneous and Exact Interval Estimates for the Contrast of Two Groups Based on an Extremely High Dimensional Response Variable: Application to Mass Spec Data Analysis, Yuhyun Park, Sean R. Downing, Cheng Li Dr., William C. Hahn, Philip W. Kantoff, and L. J. Wei
Simultaneous estimation procedures and multiple testing: a decision-theoretic framework, Debashis Ghosh
Spatio-temporal Point Processes: Methods and Applications, Peter J. Diggle
Standardizing Markers to Evaluate and Compare their Performances, Margaret S. Pepe and Gary M. Longton
Statistical Inference for Variable Importance, Mark J. van der Laan
Survival Ensembles, Torsten Hothorn, Peter Buhlmann, Sandrine Dudoit, Annette M. Molinaro, and Mark J. van der Laan
Test Statistics Null Distributions in Multiple Testing: Simulation Studies and Applications to Genomics, Katherine S. Pollard, Merrill D. Birkner, Mark J. van der Laan, and Sandrine Dudoit
The Bayesian two-sample t-test, Mithat Gonen, Wesley O. Johnson, Yonggang Lu, and Peter H. Westfall
The Clustering of Regression Models Method with Applications in Gene Expression Data, Li-Xuan Qin and Steven G. Self
The Optimal Discovery Procedure: A New Approach to Simultaneous Significance Testing, John D. Storey
The Optimal Discovery Procedure for Large-Scale Significance Testing, with Applications to Comparative Microarray Experiments, John D. Storey, James Y. Dai, and Jeffrey T. Leek
THE ROLE OF AN EXPLICIT CAUSAL FRAMEWORK IN AFFECTED SIB PAIR DESIGNS WITH COVARIATES , Constantine E. Frangakis, Fan Li, and Betty Q. Doan
The Sensitivity and Specificity of Markers for Event Times, Tianxi Cai, Margaret S. Pepe, Thomas Lumley, Yingye Zheng, and Nancy Swords Jenny
Understanding the Continual Reassessment Method for Dose Finding Studies: An Overview for Non-Statisticians, Elizabeth Garrett-Mayer
Use of Unbiased Estimating Equations to Estimate Correlation in Generalized Estimating Equation Analysis of Longitudinal Trials, Wenguang Sun, Justine Shults, and Mary Leonard