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Collection of Biostatistics Research Archive

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    Content Posted in 2008

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    A Bayesian Approach to Modeling Associations Between Pulsatile Hormones, Nichole E. Carlson, Timothy D. Johnson, and Morton B. Brown

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    Accommodating Covariates in ROC Analysis, Holly Janes, Gary M. Longton, and Margaret Pepe

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    Accounting for Errors from Predicting Exposures in Environmental Epidemiology and Environmental Statistics, Adam A. Szpiro, Lianne Sheppard, and Thomas Lumley

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    A Comparison of Methods for Estimating the Causal Effect of a Treatment in Randomized Clinical Trials Subject to Noncompliance, Rod Little, Qi Long, and Xihong Lin

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    A Functional Random Effects Model for Flexible Assessment of Susceptibility in Longitudinal Designs, Brent A. Coull

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    A Guide to Causal Parameters in Case-Control Designs: Targeted Maximum Likelihood Estimation, Sherri Rose and Mark J. van der Laan

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    A Metastasis or a Second Independent Cancer? Evaluating the Clonal Origin of Tumors Using Array-CGH Data, Irina Ostrovnaya, Adam Olshen, Venkatraman E. Seshan, Irene Orlow, D G. Albertson, and Colin B. Begg

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    A Method for Visualizing Multivariate Time Series Data, Roger D. Peng

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    Analysis of Adverse Events in Drug Safety: A Multivariate Approach Using Stratified Quasi-least Squares, Hanjoo Kim, Justine Shults, Scott Patterson, and Robert Goldberg-Alberts

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    ANALYSIS OF SUBGROUP EFFECTS IN RANDOMIZED TRIALS WHEN SUBGROUP MEMBERSHIP IS INFORMATIVELY MISSING: APPLICATION TO THE MADIT II STUDY, Daniel O. Scharfstein, Georgiana Onicescu, and Steven Goodman

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    Analyzing Correlated Longitudinal and Survival Data in Clinical Trials Using Multivariate Time-to-Event Methods, Benjamin R. Saville, Amy H. Herring, and Gary G. Koch

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    An Empirical Study of Small-Area Variation for ICD-9 Surgical Procedures, Paula Diehr, Kevin Cain, Zhan Ye, and John Loeser

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    A Network-constrained Empirical Bayes Method for Analysis of Genomic Data, Caiyan Li, Zhi Wei, and Hongzhe Li

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    A New Class of Rank Tests for Interval-censored Data, Guadalupe Gomez and Ramon Oller Pique

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    A Note on Risk Prediction for Case-Control Studies, Sherri Rose and Mark J. van der Laan

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    A NOVEL AND SIMPLE RULE OF THUMB FOR MULTIPLICITY CONTROL IN EQUIVALENCE TESTING USING TWO ONE-SIDED TESTS, Carolyn Lauzon and Brian S. Caffo

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    AN OVERVIEW OF OBSERVATIONAL SLEEP RESEARCH WITH APPLICATION TO SLEEP STAGE TRANSITIONING, Brian S. Caffo, B. Swihart, A. Laffan, C. Crainiceanu, and N. Punjabi

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    A Powerful and Flexible Multilocus Association Test for Quantitative Traits, Lydia Coulter Kwee, Dawei Liu, Xihong Lin, Debashis Ghosh, and Michael P. Epstein

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    Applications of Extensions of Bivariate Rank Sum Tests to the Bilateral Crossover Design to Compare Two Treatments Through Four Sequence Groups, Atsushi Kawaguchi, Gary G. Koch, and Ratna Ramaswamy

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    A SIMPLE INDEX OF SMOKING, Abhaya Indrayan Dr., Rajeev Kumar Mr., and Shridhar Dwivedi Dr.

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    A Simulation Experiment to Investigate the Distributional Behavior of Extreme Cook's Distance for GEE to Models with Contaminated Binary Responses, Kunthel By, John Preisser, and Bahjat Qaqish

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    A Small Sample Correction for Estimating Attributable Risk in Case-Control Studies, Daniel B. Rubin

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    Assessing The Role Of Multi-protein Complexes In Determining Phenotype, Nolwenn Le Meur and Robert Gentleman

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    Bayesian Model Averaging for Clustered Data: Imputing Missing Daily Air Pollution Concentration, Howard H. Chang, Francesca Dominici, and Roger D. Peng

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    Borrowing Information Across Populations in Estimating Positive and Negative Predictive Values, Ying Huang, Youyi Fong, John Wei, and Ziding Feng

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    Caching and Distributing Statistical Analyses in R, Roger D. Peng

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    Calibrating Parametric Subject-specific Risk Estimation, Tianxi Cai, Lu Tian, Hajime Uno, Scott D. Solomon, and L. J. Wei

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    Causal Inference in Observational Studies with Outcome-Dependent Sampling, Weiwei Wang, Daniel Scharfstein, Zhiqiang Tan, and Ellen J. MacKenzie

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    Change-point Problem and Regression: An Annotated Bibliography, Ahmad Khodadadi and Masoud Asgharian

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    Cluster Mass Inference Method via Random Field Theory, Hui Zhang, Thomas E. Nichols, and Timothy D. Johnson

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    Confidence Intervals for Negative Binomial Random Variables of High Dispersion, David Shilane, Alan E. Hubbard, and S N. Evans

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    Confidence Intervals for the Population Mean Tailored to Small Sample Sizes, with Applications to Survey Sampling, Michael Rosenblum and Mark J. van der Laan

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    Covariate Adjustment for the Intention-to-Treat Parameter with Empirical Efficiency Maximization, Daniel B. Rubin and Mark J. van der Laan

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    Data-adaptive Selection Of The Adjustment Set In Variable Importance Estimation, Oliver Bembom, Jeffrey W. Fessel, Robert W. Shafer, and Mark J. van der Laan

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    Data-adaptive selection of the truncation level for Inverse-Probability-of-Treatment-Weighted estimators, Oliver Bembom and Mark J. van der Laan

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    Data Quality Assessment of Ungated Flow Cytometry Data in High, Nolwenn Le Meur, Anthony Rossini, Maura Gasparetto, Clay Smith, Ryan R. Brinkman, and Robert Gentleman

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    DESIGN AND ANALYSIS ISSUES IN GENOME-WIDE SOMATIC MUTATION STUDIES OF CANCER, Giovanni Parmigiani, Simina Boca, Jimmy Lin, Kenneth W. Kinzler, Victor E. Velculescu, and Bert Vogelstein

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    Detection of Recurrent Copy Number Alterations in the Genome: a Probabilistic Approach, Oscar M. Rueda and Ramon Diaz-Uriarte

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    Doubly Robust Ecological Inference, Daniel B. Rubin and Mark J. van der Laan

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    Empirical Null and False Discovery Rate Inference for Exponential Families, Armin Schwartzman

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    Estimating the Causal Effect of Lower Tidal Volume Ventilation on Survival in Patients with Acute Lung Injury, Weiwei Wang, Daniel Scharfstein, Roy Brower, and Dale Needham

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    Estimation and Comparison of Receiver Operating Characteristic Curves, Margaret Pepe, Gary M. Longton, and Holly Janes

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    Estimation and Testing for the Effect of a Genetic Pathway on a Disease Outcome Using Logistic Kernel Machine Regression via Logistic Mixed Models, Dawei Liu, Debashis Ghosh, and Xihong Lin

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    Estimation Based on Case-Control Designs with Known Incidence Probability, Mark J. van der Laan

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    Estimation for Arbitrary Functionals of Survival, Kyle Rudser, Michael L. LeBlanc, and Scott S. Emerson

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    Estimation in Semiparametric Transition Measurement Error Models for Longitudinal Data, Wenqin Pan, Donglin Zeng, and Xihong Lin

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    Estimation of Controlled Direct Effects, Sylvie Goetgeluk, Stijn Vansteelandt, and Els Goetghebeur

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    Evaluating Subject-level Incremental Values of New Markers for Risk Classification Rule, Tianxi Cai, Lu Tian, Donald M. Lloyd-Jones, and L. J. Wei

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    Expanded Technical Report: Mapping Ancient Forests: Bayesian Inference for Spatio-temporal Trends in Forest Composition Using the Fossil Pollen Proxy Record, Christopher J. Paciorek and Jason S. McLachlan

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    Extensions to Gene Set Enrichment, Zhen Jiang and Robert Gentleman

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    FDR Controlling Procedure for Multi-stage Analyses, Catherine Tuglus and Mark J. van der Laan

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    Finding Recurrent Regions of Copy Number Variation: A Review, Oscar M. Rueda and Ramon Diaz-Uriarte

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    GENERALIZED MULTILEVEL FUNCTIONAL REGRESSION, Ciprian M. Crainiceanu, Ana-Maria Staicu, and Chongzhi Di

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    GEOSTATISTICAL INFERENCE UNDER PREFERENTIAL SAMPLING, Peter J. Diggle, Raquel Menezes, and Ting-li Su

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    Incorporation of Genetic Pathway Information into Analysis of Multivariate Gene Expression Data, Zhi Wei, Jane E. Minturn, Eric Rappaport, Garrett Brodeur, and Hongzhe Li

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    Influence of prediction approaches for spatially-dependent air pollution exposure on health effect estimation, Sun-Young Kim, Lianne Sheppard, and Ho Kim

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    JOINTLY MODELING CONTINUOUS AND BINARY OUTCOMES FOR BOOLEAN OUTCOMES: AN APPLICATION TO MODELING HYPERTENSION, Xianbin Li, Brian S. Caffo, and Elizabeth Stuart

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    Joint Spatial Modeling of Recurrent Infection and Growth with Processes Under Intermittent Observation, Farouk S. Nathoo

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    LEARNING FROM NEAR MISSES IN MEDICATION ERRORS: A BAYESIAN APPROACH, Jessica A. Myers, Francesca Dominici, and Laura Morlock

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    Limitations of Remotely-sensed Aerosol as a Spatial Proxy for Fine Particulate Matter, Christopher J. Paciorek and Yang Liu

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    Marginal Structural Models for Partial Exposure Regimes, Stijn Vansteelandt, Karl Mertens, Carl Suetens, and Els Goetghebeur

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    Measurement Error Caused by Spatial Misalignment in Environmental Epidemiology, Alexandros Gryparis, Christopher J. Paciorek, Ariana Zeka, Joel Schwartz, and Brent A. Coull

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    Model-based Clustering of Methylation Array Data: A Recursive-partitioning Algorithm for High-dimensional Data Arising as a Mixture of Beta Distributions, E. Andres Houseman, Brock C. Christensen, Ru-Fang Yeh, Carmen J. Marsit, Margaret R. Karagas, Margaret Wrensch, Heather H. Nelson, Joseph Wiemels, Shichun Zheng, John K. Wiencke, and Karl T. Kelsey

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    Model-Robust Regression and a Bayesian `Sandwich' Estimator, Adam A. Szpiro, Kenneth M. Rice, and Thomas Lumley

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    MODEL SELECTION AND HEALTH EFFECT ESTIMATION IN ENVIRONMENTAL EPIDEMIOLOGY, Francesca Dominici, Chi Wang, Ciprian Crainiceanu, and Giovanni Parmigiani

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    Multilevel Latent Class Models with Dirichlet Mixing Distribution, Chongzhi Di and Karen Bandeen-Roche

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    Multiple imputation of timing of mother-to-child transmission of HIV, Elizabeth Brown and Ying Qing Chen

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    Nonparametric Heteroscedastic Transformation Regression Models for Skewed Data with an Application to Health Care Costs, Xiao-Hua Zhou, Huazhen Lin, and Eric Johnson

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    Nonparametric Inference Procedure For Percentiles of the Random Effect Distribution in Meta Analysis, Rui Wang, Lu Tian, Tianxi Cai, and L. J. Wei

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    Nonparametric Regression Using Local Kernel Estimating Equations for Correlated Failure Time Data, Zhangsheng Yu and Xihong Lin

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    On the designation of the patterned associations for longitudinal Bernoulli data: weight matrix versus true correlation structure?, Hanjoo Kim, Joseph M. Hilbe, and Justine Shults

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    ON THE MERITS OF VOXEL-BASED MORPHOMETRIC PATH-ANALYSIS FOR INVESTIGATING VOLUMETRIC MEDIATION OF A TOXICANT'S INFLUENCE ON COGNITIVE FUNCTION, Shu-chih Su, Brian S. Caffo, Lynn E. Eberly, Elizabeth Garrett-Mayer, Walter F. Stewart, Sining Chen, David Yousem, Christos Davatzikos, and Brian Schwartz

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    Optimal Cutpoint Estimation with Censored Data, Mithat Gonen and Camelia Sima

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    Performance of One-Step Approximation Relative to Exact Cluster Cook's Distance for GEE, John Preisser, Kunthel By, and Bahjat Qaqish

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    Practical Large-Scale Spatio-Temporal Modeling of Particulate Matter Concentrations, Christopher J. Paciorek, Jeff D. Yanosky, Robin C. Puett, Francine Laden, and Helen H. Suh

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    Predicting Intra-Urban Variation in Air Pollution Concentrations with Complex Spatio-Temporal Interactions, Adam A. Szpiro, Paul D. Sampson, Lianne Sheppard, Thomas Lumley, Sara D. Adar, and Joel Kaufman

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    Properties of Monotonic Effects on Directed Acyclic Graphs, Tyler J. VanderWeele and James M. Robins

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    Properties of Monotonic Effects on Directed Acyclic Graphs, Tyler J. VanderWeele and James M. Robins

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    "%QLS SAS Macro: A SAS macro for Analysis of Longitudinal Data Using Quasi-Least Squares"., Hanjoo Kim and Justine Shults

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    Reversal in declining trend of adult mortality in many states of India, 1970-2001: Is it due to AIDS?, Abhaya Indrayan and Ajay Kumar Bansal

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    Semiparametric and nonparametric methods for evaluating risk prediction markers in case-control studies, Ying Huang and Margaret Pepe

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    Semiparametric Inferential Procedures for Comparing Multivariate ROC Curves with Interaction Terms, Liansheng Tang and Xiao-Hua Zhou

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    Semi-Parametric Maximum Likelihood Estimates for ROC Curves of Continuous-Scale Tests, Xiao-Hua Zhou and Huazhen Lin

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    Semiparametric Maximum Likelihood Estimation in Normal Transformation Models for Bivariate Survival Data, Yi Li, Ross L. Prentice, and Xihong Lin

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    Semiparametric methods for evaluating the covariate-specific predictiveness of continuous markers in matched case-control studies, Ying Huang and Margaret S. Pepe

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    Spatial Misalignment in time series studies of air pollution and health data, Roger D. Peng and Michelle L. Bell

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    STATISTICAL METHODS FOR AUTOMATED DRUG SUSCEPTIBILITY TESTING: BAYESIAN MINIMUM INHIBITORY CONCENTRATION PREDICTION FROM GROWTH CURVES, Xi Zhou, Merlise A. Clyde, James Garrett, Viridiana Lourdes, Michael O'Connell, Giovanni Parmigiani, David J. Turner, and Tim Wiles

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    Supervised Distance Matrices: Theory and Applications to Genomics, Katherine S. POLLARD and Mark J. van der Laan

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    Synthesis Analysis of Regression Models with a Continuous Outcome, Andrew Zhou, Nan Hu, Guizhou Hu, and Martin Root

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    Targeted Methods for Biomarker Discovery, the Search for a Standard, Catherine Tuglus and Mark J. van der Laan

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    Testing Variance Components in Multilevel Linear Models using Approximate Bayes Factors, Benjamin R. Saville, Amy H. Herring, Jay S. Kaufman, and David A. Savitz

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    The Calculation of the 97.5% Upper Confidence Bound: Application to Clustered Binary Data in a Binomial Non-Inferiority Two-Sample Trial., William F. McCarthy

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    The combination of ecological and case-control data, Sebastien Haneuse and Jon Wakefield

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    The Construction and Analysis of Adaptive Group Sequential Designs, Mark J. van der Laan

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    The Design and Sample Size Requirement for a Cluster Randomized Non-Inferiority Trial with Two Binary Co-Primary Outcomes., William F. McCarthy

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    The Highest Confidence Density Region and Its Usage for Inferences about the Survival Function with Censored Data, Lu Tian, Rui wang, Tianxi Cai, and L. J. Wei

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    The Multiple Admission Factor (MAF) in Small Area Variation Analysis, Kevin Cain and Paula Diehr

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    Trading Bias for Precision: Decision Theory for Intervals and Sets, Kenneth M. Rice, Thomas Lumley, and Adam A. Szpiro

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    Using Longitudinal Data to Estimate the Effect of Starting to Exercise on the Health of Sedentary Older Adults, Paula Diehr and Calvin Hirsch

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    U-Statistics-based Tests for Multiple Genes in Genetic Association Studies, Zhi Wei, Mingyao Li PhD, Timothy Rebbeck, and Hongzhe Li

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    Variable Selection by Bayesian Adaptive Lasso and Iterative Adaptive Lasso, with Application for Genome-wide Multiple Loci Mapping, Wei Sun, Joseph G. Ibrahim, and Fei Zou

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    Why Match? Investigating Matched Case-Control Study Designs with Causal Effect Estimation, Sherri Rose and Mark J. van der Laan

 
 
 

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