Content Posted in 2007
A BAYESIAN APPROACH TO EFFECT ESTIMATION ACCOUNTING FOR ADJUSTMENT UNCERTAINTY, Chi Wang, Giovanni Parmigiani, Ciprian Crainiceanu, and Francesca Dominici
A BAYESIAN HIERARCHICAL FRAMEWORK FOR SPATIAL MODELING OF fMRI DATA, F. DuBois Bowman, Brian S. Caffo, Susan Spear Bassett, and Clinton Kilts
A BAYESIAN HIERARCHICAL MODEL FOR CONSTRAINED DISTRIBUTED LAG FUNCTIONS: ESTIMATING THE TIME COURSE OF HOSPITALIZATION ASSOCIATED WITH AIR POLLUTION EXPOSURE, Roger Peng, Francesca Dominici, and Leah J. Welty
A Bayesian hierarchical model for spot fluorescence in microarrays, Federico Mattia Stefanini
A Bayesian Image Analysis of the Change in Tumor/Brain Contrast Uptake Induced by Radiation via Reversible Jump Markov Chain Monte Carlo, Xiaoxi Zhang, Tim Johnson, and Roderick J.A. Little
A BAYESIAN MODEL FOR CROSS-STUDY DIFFERENTIAL GENE EXPRESSION, Robert B. Scharpf, Hakon Tjelemeland, Giovanni Parmigiani, and Andrew B. Nobel
A CASE STUDY IN PHARMACOLOGIC IMAGING USING PRINCIPAL CURVES IN SINGLE PHOTON EMISSION COMPUTED TOMOGRAPHY, Brian S. Caffo, Ciprian M. Crainiceanu, Lijuan Deng, and Craig W. Hendrix
A Censored Multinomial Regression Model for Perinatal Mother to Child Transmission of HIV, Charlotte C. Gard and Elizabeth R. Brown
Adjusting for Covariates in Studies of Diagnostic, Screening, or Prognostic Markers: An Old Concept in a New Setting, Holly Janes and Margaret Pepe
Adjustment to the McNemar’s Test for the Analysis of Clustered Matched-Pair Data, William F. McCarthy
A Flexible Semi-Parametric Approach to Estimating a Dose-Response Relationship: the Treatment of Childhood Amblyopia. , David A. Stephens and Erica E M Moodie
A HIDDEN MARKOV MODEL FOR JOINT ESTIMATION OF GENOTYPE AND COPY NUMBER IN HIGH-THROUGHPUT SNP CHIPS, Robert B. Scharpf, Giovanni Parmigiani, Jonathan Pevnser, and Ingo Ruczinski
A Hidden Spatial-temporal Markov Random Field Model for Network-based Analysis of Time Course Gene Expression Data, Zhi Wei and Hongzhe Li
A Markov Random Field Model for Network-based Analysis of Genomic Data, Zhi Wei and HongZhe Li
Analysis of multi-level correlated data in the framework of generalized estimating equations via xtmultcorr procedures in Stata and qls functions in Matlab, Justine Shults and Sarah J. Ratcliffe
Analyzing Direct Effects in Randomized Trials with Secondary Interventions , Michael Rosenblum, Nicholas P. Jewell, Mark J. van der Laan, Stephen Shiboski, Ariane van der Straten, and Nancy Padian
Analyzing Sequentially Randomized Trials Based on Causal Effect Models for Realistic Individualized Treatment Rules, Oliver Bembom and Mark J. van der Laan
An Example of How to Write the Statistical Section of a Bioequivalence Study Protocol for FDA Review, William F. McCarthy
A Note on Targeted Maximum Likelihood and Right Censored Data, Mark J. van der Laan and Daniel Rubin
A Parametric ROC Model Based Approach for Evaluating the Predictiveness of Continuous Markers in Case-control Studies, Ying Huang and Margaret Pepe
A REPRODUCIBLE RESEARCH TOOLKIT FOR R, Roger Peng
A SMOOTHING APPROACH TO DATA MASKING, Yijie Zhous, Francesca Dominici, and Thomas A. Louis
Assessing Population Level Genetic Instability via Moving Average, Samuel McDaniel, Rebecca Betensky, and Tianxi Cai
ASSESSING THE UNRELIABILITY OF THE MEDICAL LITERATURE: A RESPONSE TO "WHY MOST PUBLISHED RESEARCH FINDINGS ARE FALSE", Steven Goodman and Sander Greenland
Assessment of a CGH-based Genetic Instability, David A. Engler, Yiping Shen, J F. Gusella, and Rebecca A. Betensky
Assessment of Sample Size and Power for the Analysis of Clustered Matched-Pair Data, William F. McCarthy
A SURVEY OF THE LIKELIHOOD APPROACH TO BIOEQUIVALENCE TRIALS, Leena Choi, Brian S. Caffo, and Charles Rohde
Bayesian Bivariate Image Analysis with Application to Dual Autoradiography, Timothy D. Johnson and Morand Piert
BAYESIAN INFERENCE FOR SMOKING CESSATION WITH A LATENT CURE STATE, Sheng Luo, Ciprian M. Crainiceanu, Thomas A. Louis, and Nilanjan Chatterjee
Bayesian Spatial Modeling of fMRI data: A Multiple-Subject Analysis, Lei Xu, Timothy Johnson, and Thomas Nichols
Biomarker Discovery Using Targeted Maximum Likelihood Estimation: Application to the Treatment of Antiretroviral Resistant HIV Infection, Oliver Bembom, Maya L. Petersen , Soo-Yon Rhee , W. Jeffrey Fessel , Sandra E. Sinisi, Robert W. Shafer, and Mark J. van der Laan
Biomarker Evaluation Using the Controls as a Reference Population, Ying Huang and Margaret Pepe
Bootstrap Confidence Regions for Optimal Operating Conditions in Response Surface Methodology, Roger D. Gibb, I-Li Lu, and Walter H. Carter Jr
COMBINATIONAL MIXTURES OF MULTIPARAMETER DISTRIBUTIONS, Valeria Edefonti and Giovanni Parmigiani
Comparing Trends in Cancer Rates Across Overlapping Regions, Yi Li and Ram C. Tiwari
Conservative Estimation of Optimal Multiple Testing Procedures, James E. Signorovitch
Coronary Evaluation Using Multi-detector Spiral Computed Tomography Angiography: Statistical Design and Analysis, William F. McCarthy, Douglas R. Thompson, and Bruce A. Barton
Correcting Instrumental Variables Estimators for Systematic Measurement Error, Stijn Vansteelandt, Manoochehr Babanezhad, and Els Goetghebeur
Covariate Adjustment in Randomized Trials with Binary Outcomes: Targeted Maximum Likelihood Estimation, Kelly L. Moore and Mark J. van der Laan
DECOMPOSITION OF REGRESSION ESTIMATORS TO EXPLORE THE INFLUENCE OF "UNMEASURED" TIME-VARYING CONFOUNDERS, Yun Lu and Scott L. Zeger
Detailed Version: Analyzing Direct Effects in Randomized Trials with Secondary Interventions: An Application to HIV Prevention Trials, Michael A. Rosenblum, Nicholas P. Jewell, Mark J. van der Laan, Stephen Shiboski, Ariane van der Straten, and Nancy Padian
DISTRIBUTED REPRODUCIBLE RESEARCH USING CACHED COMPUTATIONS, Roger Peng and Sandrah P. Eckel
Ecologic Studies Revisited, Jon Wakefield
EFFECTIVE COMMUNICATION OF STANDARD ERRORS AND CONFIDENCE INTERVALS, Thomas A. Louis and Scott L. Zeger
Effectively Combining Independent 2 x 2 Tables for Valid Inferences in Meta Analysis with all Available Data but no Artificial Continuity Corrections for Studies with Zero Events and its Application to the Analysis of Rosiglitazone's Cardiovascular Disease Related Event Data, Lu Tian, Tianxi Cai, Nikita Piankov, Pierre-Yves Cremieux, and L. J. Wei
Empirical Efficiency Maximization, Daniel B. Rubin and Mark J. van der Laan
Estimating Sensitivity and Specificity from a Phase 2 Biomarker Study that Allows for Early Termination, Margaret S. Pepe PhD
Estimating the Effect of Vigorous Physical Activity on Mortality in the Elderly Based on Realistic Individualized Treatment and Intention-to-Treat Rules, Oliver Bembom and Mark J. van der Laan
Estimating the Empirical Lorenz Curve and Gini Coefficient in the Presence of Error, Chaya S. Moskowitz, E. S. Venkatraman, Elyn Riedel, and Colin B. Begg
Estimating the Prevalence of Disease Using Relatives of Case and Control Probands, Kristin N. Javaras, Nan M. Laird, James I. Hudson, and Brian D. Ripley
Estimating Time-to-Event From Longitudinal Categorical Data Using Random Effects Markov Models: Application to Multiple Sclerosis Progression, Micha Mandel and Rebecca A. Betensky
Estimation of Dose-Response Functions for Longitudinal Data, Erica E M Moodie and David A. Stephens
Evaluating a Group Sequential Design in the Setting of Nonproportional Hazards, Daniel L. Gillen and Scott S. Emerson
Evaluating the ROC Performance of Markers for Future Events, Margaret Pepe, Yingye Zheng, and Yuying Jin
False Discovery Rate Analysis of Brain Diffusion Direction Maps, Armin Schwartzman, Robert F. Dougherty, and Jonathan E. Taylor
FORECASTING THE GLOBAL BURDEN OF ALZHEIMER'S DISEASE, Ron Brookmeyer, Elizabeth Johnson, Kathryn Ziegler-Graham, and H. Michael Arrighi
Gamma Generalized Linear Models for Pharmacokinetic Data, Ruth Salway and Jon Wakefield
Group SCAD Regression Analysis for Microarray Time Course Gene Expression Data, Lifeng Wang, Guang Chen, and Hongzhe Li PhD
Identifiability and Estimation of Causal Effects in Randomized Trials with Noncompliance and Completely Non-ignorable Missing-Data, Hua Chen, Zhi Geng, and Xiao-Hua Zhou
IDENTIFYING EFFECT MODIFIERS IN AIR POLLUTION TIME-SERIES STUDIES USING A TWO-STAGE ANALYSIS, Sandrah P. Eckel and Thomas A. Louis
Identifying patients who need additional biomarkers for better prediction of health outcome or diagnosis of clinical phenotype, Lu Tian, Tianxi Cai, and L. J. Wei
Improving GSEA for Analysis of Biologic Pathways for Differential Gene Expression across a Binary Phenotype , Irina Dinu, John D. Potter, Thomas Mueller, Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, Gunilla Einecke, Konrad S. Famulski, Philip Halloran, and Yutaka Yasui
INFERENCE FOR SURVIVAL CURVES WITH INFORMATIVELY COARSENED DISCRETE EVENT-TIME DATA: APPLICATION TO ALIVE, Michelle Shardell, Daniel O. Scharfstein, David Vlahov, and Noya Galai
IS MRI-BASED VOLUME A MEDIATOR OF THE ASSOCIATION OF CUMULATIVE LEAD DOSE WITH COGNITIVE FUNCTION?, Brian S. Caffo, Sining Chen, Walter Stewart, Karen Bolla, David Yousem, Christos Davatzikos, and Brian S. Schwartz
Lachenbruch’s Method for Determining the Sample Size Required for Testing Interactions: How It Compares to nQuery Advisor and O’Brien’s SAS UnifyPow., William F. McCarthy
LASAGNA PLOTS: A SAUCY ALTERNATIVE TO SPAGHETTI PLOTS, Bruce Swihart, Brian Caffo, Bryan D. James, Matthew Strand, Brian S. Schwartz, and Naresh M. Punjabi
Longitudinal Data with Follow-up Truncated by Death: Finding a Match Between Analysis Method and Research Aims, Brenda Kurland, Laura Lee Johnson, and Paula Diehr
Loss-Based Estimation with Evolutionary Algorithms and Cross-Validation, David Shilane, Richard H. Liang, and Sandrine Dudoit
Methodological Issues in the Study of the Effects of Hemoglobin Variability, Marshall Joffe, Wei Yang, Steve Brunelli, and Harold Feldman
Model-Robust Bayesian Regression and the Sandwich Estimator, Adam A. Szpiro, Kenneth M. Rice, and Thomas Lumley
MODIFIED TEST STATISTICS BY INTER-VOXEL VARIANCE SHRINKAGE WITH AN APPLICATION TO fMRI, Shu-chih Su, Brian Caffo, Elizabeth Garrett-Mayer, and Susan Bassett
MORTALITY IN THE MEDICARE POPULATION AND CHRONIC EXPOSURE TO FINE PARTICULATE AIR POLLUTION , Scott L. Zeger, Francesca Dominici, Aidan McDermott, and Jonathan M. Samet
Multiple Imputation Methods for Treatment Noncompliance and Nonresponse in Randomized Clinical Trials, Leslie Taylor and Xiao-Hua (Andrew) Zhou
MULTIPLE MODEL EVALUATION ABSENT THE GOLD STANDARD VIA MODEL COMBINATION, Edwin J. Iversen, Jr.; Giovanni Parmigiani; and Sining Chen
Network-constrained Regularization and Variable Selection for Analysis of Genomic Data, Caiyan Li and Hongzhe Li
Nonparametric and Semiparametric Group Sequential Methods for Comparing Accuracy of Diagnostic Tests, Liansheng Tang, Scott S. Emerson, and Xiao-Hua Zhou
On Asymptotically Optimal Tests Under Loss of Identifiability in Semiparametric Models, Rui Song, Michael R. Kosorok, and Jason P. Fine
On Comparing the Clustering of Regression Models Method with K-means Clustering, Li-Xuan Qin and Steven G. Self
OPTIMAL PROPENSITY SCORE STRATIFICATION, Jessica A. Myers and Thomas A. Louis
OPTIMIZED CROSS-STUDY ANALYSIS OF MICROARRAY-BASED PREDICTORS, Xiaogang Zhong, Luigi Marchionni, Leslie Cope, Edwin S. Iversen, Elizabeth S. Garrett-Mayer, Edward Gabrielson, and Giovanni Parmigiani
Power Boosting in Genome-Wide Studies Via Methods for Multivariate Outcomes, Mary J. Emond
Quantitative Magnetic Resonance Image Analysis via the EM Algorithm with Stochastic Variation, Xiaoxi Zhang, Timothy D. Johnson, and Roderick J.A. Little
RACIAL DISPARITIES IN MORTALITY RISKS IN A SAMPLE OF THE U.S. MEDICARE POPULATION, Yijie Zhou, Francesca Dominici, and Thomas A. Louis
RANDOM EFFECTS MODELS IN A META-ANALYSIS OF THE ACCURACY OF DIAGNOSTIC TESTS WITHIN A GOLD STANDARD IN THE PRESENCE OF MISSING DATA, Haitao Chu, Sining Chen, and Thomas A. Louis
Regression Analysis of a Disease Onset Distribution Using Diagnosis Data, Jessica G. Young, Nicholas P. Jewell, and Steven J. Samuels
Regression Models for Identifying Noise Sources in Magnetic Resonance Images, Hongtu Zhu, Yimei Li, Joseph G. Ibrahim, Xiaoyan Shi, Hongyu An, Yasheng Chen, Weili Lin, Daniel B. Rowe, and Bradley G. Peterson
Reporting and Interpretation in Genome-Wide Association Studies, Jon Wakefield
Resampling-Based Empirical Bayes Multiple Testing Procedures for Controlling Generalized Tail Probability and Expected Value Error Rates: , Sandrine Dudoit, Houston N. Gilbert, and Mark J. van der Laan
Review of the Maximum Likelihood Functions for Right Censored Data. A New Elementary Derivation., Stefano Patti, Elia Biganzoli, and Patrizia Boracchi
ROC Surfaces in the Presence of Verification Bias, Yueh-Yun Chi and Xiao-Hua (Andrew) Zhou
SEMIPARAMETRIC BIVARIATE QUANTILE-QUANTILE REGRESSION FOR ANALYZING SEMI-COMPETING RISKS DATA, Daniel O. Scharfstein, James M. Robins, and Mark van der Laan
Simultaneous Confidence Intervals Based on the Percentile Bootstrap Approach, Micha Mandel and Rebecca A. Betensky
Spatio-temporal Associations Between GOES Aerosol Optical Depth Retrievals and Ground-Level PM2.5, Christopher J. Paciorek, Yang Liu, Hortensia Moreno-Macias, and Shobha Kondragunta
Statistical Evaluation of Evidence for Clonal Allelic Alterations in array-CGH Experiments, Colin B. Begg, Kevin Eng, Adam Olshen, and E S. Venkatraman
Statistical Methods for Inference of Genetic Networks and Regulatory Modules, Hongzhe Li
Super Learner, Mark J. van der Laan, Eric C. Polley, and Alan E. Hubbard
Survival Analysis with Large Dimensional Covariates: An Application in Microarray Studies, David A. Engler and Yi Li
Testing random effects in the linear mixed model using approximate Bayes factors, Benjamin R. Saville and Amy H. Herring
The Analysis of Pixel Intensity (Myocardial Signal Density) Data: The Quantification of Myocardial Perfusion by Imaging Methods., William F. McCarthy and Douglas R. Thompson
The Assessment of the Degree of Concordance Between the Observed Values and the Predicted Values of a Mixed-Effect Model Using “Method of Comparison” Techniques, William F. McCarthy and Nan Guo
The Causal Effect of Recent Leisure-Time Physical Activity on All-Cause Mortality Among the Elderly, Oliver Bembom, Mark J. van der Laan, and Ira B. Tager
The Existence of Maximum Likelihood Estimates for the Binary Response Logistic Regression Model, William F. McCarthy
The Integrative Correlation Coefficient: a Measure of Cross-study Reproducibility for Gene Expressionea Array Data, Leslie M. Cope, Liz Garrett-Mayer, Edward Gabrielson, and Giovanni Parmigiani
Time-Dependent Performance Comparison of Stochastic Optimization Algorithms, David Shilane, Jarno Martikainen, and Seppo Ovaska
TRAB: TESTING WHETHER MUTATION FREQUENCIES ARE ABOVE AN UNKNOWN BACKGROUND, Giovanni Parmigiani, Sining Chen, and Victor E. Velculescu
Using Regression Models to Analyze Randomized Trials: Asymptotically Valid Hypothesis Tests Despite Incorrectly Specified Models, Michael Rosenblum and Mark J. van der Laan
Variable Selection for Nonparametric Varying-Coefficient Models for Analysis of Repeated Measurements, Lifeng Wang and Hongzhe Li
Vertex Clustering in Random Graphs via Reversible Jump Markov Chain Monte Carlo, Stefano Monni and Hongzhe Li
Weighted Likelihood Method for Grouped Survival Data in Case-Cohort Studies with Application to HIV Vaccine Trials, Zhiguo Li, Peter B. Gilbert, and Bin Nan
What Is the Best Reference RNA? And Other Questions Regarding the Design and Analysis of Two-Color Microarray Experiments, Kathleen F. Kerr, Kyle A. Serikawa, Caimiao Wei, Mette A. Peters, and Roger E. Bumgarner