COBRA Preprint Series

The COBRA Preprint Series contains manuscripts by top researchers, many of which will eventually appear in leading journals. For a look ahead to tomorrow's cutting edge research, browse the papers below.


Papers from 2009
Mean Survival Time from Right Censored Data (December 15, 2009) Ming Zhong and Kenneth R. Hess
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Targeted Genomic signature profiling with Quasi-alignment statistics (November 17, 2009) Rao Mallik Kotamarti, Douglas W. Raiford, Michael Hahsler, Yuhang Wang, Monnie McGee, and Maggie Dunham
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Two-stage Decompositions for the Analysis of Functional Connectivity for fMRI With Application to Alzheimer's Disease Risk (November 14, 2009) Brian S. Caffo, Ciprian M. Crainiceanu, Guillermo Verduzco, Stewart H. Mostofsky, Susan Spear-Bassett, and James J. Pekar
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Modeling Multilevel Sleep Transitional Data Via Poisson Log-Linear Multilevel Models (October 18, 2009) Bruce J. Swihart
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Composite Likelihood EM Algorithm with Applications to Multivariate Hidden Markov Model  (September 30, 2009) Xin Gao and Peter Xuekun Song
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Shrinkage Estimation of Expression Fold Change As an Alternative to Testing Hypotheses of Equivalent Expression (August 10, 2009) Zahra Montazeri, Corey M. Yanofsky, and David R. Bickel
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Reliability of the Model for Clustering of Longitudinal datasets of Infant Mortality Rate in India (July 15, 2009) Ajay Kumar Bansal and S D. Sharma
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Simple, Defensible Sample Sizes Based on Cost Efficiency -- With Discussion and Rejoinder (June 12, 2009) Peter Bacchetti, Charles E. McCulloch, Mark R. Segal, Richard Simon, Peter Muller, Gary L. Rosner, James A. Hanley, and Stan Shapiro
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Nonparametric Incidence Estimation From Prevalent Cohort Survival Data (March 31, 2009) Marco Carone, Masoud Asgharian, and Mei-Cheng Wang
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A Novel Topology for Representing Protein Folds (March 24, 2009) Mark R. Segal
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Fitting ACE Structural Equation Models to Case-Control Family Data (March 18, 2009) Kristin N. Javaras, James I. Hudson, and Nan M. Laird
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Correlated Binary Regression Using Orthogonalized Residuals (March 10, 2009) Richard C. Zink and Bahjat F. Qaqish
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Validation of Differential Gene Expression Algorithms: Application Comparing Fold Change Estimation to Hypothesis Testing (February 13, 2009) David R. Bickel and Corey M. Yanofsky
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Papers from 2008
Space-Time Regression Modeling of Tree Growth Using the Skew-t Distribution (December 1, 2008) Farouk S. Nathoo
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Detection of Recurrent Copy Number Alterations in the Genome: a Probabilistic Approach (November 20, 2008) Oscar M. Rueda and Ramon Diaz-Uriarte
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Reversal in declining trend of adult mortality in many states of India, 1970-2001: Is it due to AIDS? (November 19, 2008) Abhaya Indrayan and Ajay Kumar Bansal
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Finding Recurrent Regions of Copy Number Variation: A Review (November 18, 2008) Oscar M. Rueda and Ramon Diaz-Uriarte
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Change-point Problem and Regression: An Annotated Bibliography (November 12, 2008) Ahmad Khodadadi and Masoud Asgharian
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A SIMPLE INDEX OF SMOKING (November 6, 2008) Abhaya Indrayan Dr., Rajeev Kumar Mr., and Shridhar Dwivedi Dr.
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The Strength of Statistical Evidence for Composite Hypotheses with an Application to Multiple Comparisons (November 3, 2008) David R. Bickel
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A New Method for Constructing Exact Tests without Making any Assumptions (August 23, 2008) Karl H. Schlag
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Properties of Monotonic Effects on Directed Acyclic Graphs (August 7, 2008) Tyler J. VanderWeele and James M. Robins
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Joint Spatial Modeling of Recurrent Infection and Growth with Processes Under Intermittent Observation (August 1, 2008) Farouk S. Nathoo
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The Calculation of the 97.5% Upper Confidence Bound: Application to Clustered Binary Data in a Binomial Non-Inferiority Two-Sample Trial. (July 11, 2008) William F. McCarthy
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The Design and Sample Size Requirement for a Cluster Randomized Non-Inferiority Trial with Two Binary Co-Primary Outcomes. (July 11, 2008) William F. McCarthy
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Bringing Game Theory to Hypothesis Testing: Establishing Finite Sample Bounds on Inference (June 25, 2008) Karl H. Schlag
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Properties of Monotonic Effects on Directed Acyclic Graphs (April 15, 2008) Tyler J. VanderWeele and James M. Robins
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Papers from 2007
Estimation of Dose-Response Functions for Longitudinal Data (November 13, 2007) Erica E M Moodie and David A. Stephens
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Bootstrap Confidence Regions for Optimal Operating Conditions in Response Surface Methodology (November 12, 2007) Roger D. Gibb, I-Li Lu, and Walter H. Carter Jr
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Estimating the Prevalence of Disease Using Relatives of Case and Control Probands (August 6, 2007) Kristin N. Javaras, Nan M. Laird, James I. Hudson, and Brian D. Ripley
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An Example of How to Write the Statistical Section of a Bioequivalence Study Protocol for FDA Review (July 25, 2007) William F. McCarthy
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Adjustment to the McNemar’s Test for the Analysis of Clustered Matched-Pair Data (July 17, 2007) William F. McCarthy
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Assessment of Sample Size and Power for the Analysis of Clustered Matched-Pair Data (July 17, 2007) William F. McCarthy
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Lachenbruch’s Method for Determining the Sample Size Required for Testing Interactions: How It Compares to nQuery Advisor and O’Brien’s SAS UnifyPow. (July 16, 2007) William F. McCarthy
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The Existence of Maximum Likelihood Estimates for the Binary Response Logistic Regression Model (July 16, 2007) William F. McCarthy
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The Assessment of the Degree of Concordance Between the Observed Values and the Predicted Values of a Mixed-Effect Model Using “Method of Comparison” Techniques (July 12, 2007) William F. McCarthy and Nan Guo
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The Analysis of Pixel Intensity (Myocardial Signal Density) Data: The Quantification of Myocardial Perfusion by Imaging Methods. (May 21, 2007) William F. McCarthy and Douglas R. Thompson
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Coronary Evaluation Using Multi-detector Spiral Computed Tomography Angiography: Statistical Design and Analysis (May 21, 2007) William F. McCarthy, Douglas R. Thompson, and Bruce A. Barton
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Review of the Maximum Likelihood Functions for Right Censored Data. A New Elementary Derivation. (May 3, 2007) Stefano Patti, Elia Biganzoli, and Patrizia Boracchi
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A Flexible Semi-Parametric Approach to Estimating a Dose-Response Relationship: the Treatment of Childhood Amblyopia. (March 29, 2007) David A. Stephens and Erica E M Moodie
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False Discovery Rate Analysis of Brain Diffusion Direction Maps (March 28, 2007) Armin Schwartzman, Robert F. Dougherty, and Jonathan E. Taylor
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A Bayesian hierarchical model for spot fluorescence in microarrays (March 28, 2007) Federico Mattia Stefanini
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Improving GSEA for Analysis of Biologic Pathways for Differential Gene Expression across a Binary Phenotype (January 7, 2007) Irina Dinu, John D. Potter, Thomas Mueller, Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, Gunilla Einecke, Konrad S. Famulski, Philip Halloran, and Yutaka Yasui
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Papers from 2006
Properties of Monotonic Effects (November 8, 2006) Tyler J. VanderWeele and James M. Robins
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Exploration of distributional models for a novel intensity-dependent normalization (October 12, 2006) Nicola Lama, Patrizia Boracchi, and Elia Mario Biganzoli
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Crude Cumulative Incidence in the form of a Horvitz-Thompson like and Kaplan-Meier like Estimator (October 2, 2006) Laura Antolini, Elia Mario Biganzoli, and Patrizia Boracchi
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A Theory of Sufficient Cause Interactions (September 27, 2006) Tyler J. VanderWeele and James M. Robins
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Biologic Interaction and Their Identification (September 27, 2006) Tyler J. VanderWeele and James Robins
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A unifying approach for haplotype analysis of quantitative traits in family-based association studies: Testing and estimating gene-environment interactions with complex exposure variables (September 6, 2006) Stijn Vansteelandt and Christoph Lange
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A Flexible Statistical Method for Detecting Genomic Copy-Number Changes Using Hidden Markov Models with Reversible Jump MCMC (August 24, 2006) Oscar M. Rueda and Ramon Diaz-Uriarte
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Survival Analysis of Longitudinal Microarrays (July 24, 2006) Natasa Rajicic, Dianne M. Finkelstein, and David A. Schoenfeld
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Causal Comparisons in Randomized Trials of Two Active Treatments: The Effect of Supervised Exercise to Promote Smoking Cessation (July 3, 2006) Jason Roy and Joseph W. Hogan
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New Spiked-In Probe Sets for the Affymetrix HGU-133A Latin Square Experiment (June 10, 2006) Monnie McGee and Zhongxue Chen
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Simple Records Matching Method for diagnostic and clinical datasets of patient’s records (April 11, 2006) Salvo Reina, Vito M. Reina, and Eugenio A. Debbia
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Papers from 2005
Sample size and power calculations for body weight in beef cattle (August 29, 2005) Claudia Cristina Paro Paz, Alfredo Ribeiro de Freitas, Irineu Umberto Packer, Daniela Tambasco-Talhari, Luciana Correa de Almeida Regitano, and Mauricio Mello Alencar
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New Statistical Paradigms Leading to Web-Based Tools for Clinical/Translational Science (May 23, 2005) Knut M. Wittkowski
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